pages*: remove curly braces from example descriptions (#11462)

pages/common/!.md

@@ -3,7 +3,7 @@
 > Bash builtin to substitute with a command found in history.
 > More information: <https://www.gnu.org/software/bash/manual/bash.html#Event-Designators>.
 
-- Substitute with the previous command and run it with sudo:
+- Substitute with the previous command and run it with `sudo`:
 
 `sudo !!`
 

pages/common/bedtools.md

@@ -6,24 +6,24 @@
 
 - Intersect two files regarding the sequences' strand and save the result to the specified file:
 
-`bedtools intersect -a {{path/to/file_1}} -b {{path/to/file_2}} -s > {{path/to/output_file}}`
+`bedtools intersect -a {{path/to/file1}} -b {{path/to/file2}} -s > {{path/to/output_file}}`
 
-- Intersect two files with a left outer join, i.e. report each feature from {{file_1}} and NULL if no overlap with {{file_2}}:
+- Intersect two files with a left outer join, i.e. report each feature from `file1` and NULL if no overlap with `file2`:
 
-`bedtools intersect -a {{path/to/file_1}} -b {{path/to/file_2}} -lof > {{path/to/output_file}}`
+`bedtools intersect -a {{path/to/file1}} -b {{path/to/file2}} -lof > {{path/to/output_file}}`
 
 - Using more efficient algorithm to intersect two pre-sorted files:
 
-`bedtools intersect -a {{path/to/file_1}} -b {{path/to/file_2}} -sorted > {{path/to/output_file}}`
+`bedtools intersect -a {{path/to/file1}} -b {{path/to/file2}} -sorted > {{path/to/output_file}}`
 
-- Group file {{`path/to/file`}} based on the first three and the fifth column and summarize the sixth column by summing it up:
+- Group file `path/to/file` based on the first three and the fifth column and summarize the sixth column by summing it up:
 
 `bedtools groupby -i {{path/to/file}} -c 1-3,5 -g 6 -o sum`
 
 - Convert bam-formatted file to a bed-formatted one:
 
-`bedtools bamtobed -i {{path/to/file}}.bam > {{path/to/file}}.bed`
+`bedtools bamtobed -i {{path/to/file.bam}} > {{path/to/file.bed}}`
 
-- Find for all features in {{file_1}}.bed the closest one in {{file_2}}.bed and write their distance in an extra column (input files must be sorted):
+- Find for all features in `file1.bed` the closest one in `file2.bed` and write their distance in an extra column (input files must be sorted):
 
-`bedtools closest -a {{path/to/file_1}}.bed -b {{path/to/file_2}}.bed -d`
+`bedtools closest -a {{path/to/file1.bed}} -b {{path/to/file2.bed}} -d`

pages/common/dep.md

@@ -4,7 +4,7 @@
 > Note: The Go command `dep` with the same name is deprecated and archived.
 > More information: <https://deployer.org>.
 
-- Interactively initialize deployer in the local path (use a framework template with `--template={{template}}`):
+- Interactively initialize deployer in the local path (use a framework template with `--template=template`):
 
 `dep init`
 

pages/common/ghdl.md

@@ -7,7 +7,7 @@
 
 `ghdl -a {{filename.vhdl}}`
 
-- Elaborate a design (where `{{design}}` is the name of a configuration unit, entity unit or architecture unit):
+- Elaborate a design (where `design` is the name of a configuration unit, entity unit or architecture unit):
 
 `ghdl -e {{design}}`
 

pages/common/mosh.md

@@ -20,7 +20,7 @@
 
 `mosh {{remote_host}} -- {{command -with -flags}}`
 
-- Select Mosh UDP port (useful when `{{remote_host}}` is behind a NAT):
+- Select Mosh UDP port (useful when `remote_host` is behind a NAT):
 
 `mosh -p {{124}} {{username}}@{{remote_host}}`
 

pages/common/samtools.md

@@ -16,7 +16,7 @@
 
 `samtools sort {{input}} -o {{output.bam}}`
 
-- Index a sorted BAM file (creates {{sorted_input.bam.bai}}):
+- Index a sorted BAM file (creates `sorted_input.bam.bai`):
 
 `samtools index {{sorted_input.bam}}`
 
@@ -30,7 +30,7 @@
 
 - Merge multiple files:
 
-`samtools merge {{output}} {{input1 input2 …}}`
+`samtools merge {{output}} {{input1 input2 ...}}`
 
 - Split input file according to read groups:
 

pages/common/swig.md

@@ -16,6 +16,6 @@
 
 `swig -java {{path/to/swig_file.i}}`
 
-- Generate a binding between C and Ruby and prefix the Ruby module with {{foo::bar::}}:
+- Generate a binding between C and Ruby and prefix the Ruby module with `foo::bar::`:
 
 `swig -ruby -prefix "{{foo::bar::}}" {{path/to/swig_file.i}}`