Fix tree warp and CityJSON handling

geodata_pipeline/buildings.py

@@ -38,6 +38,71 @@ def _load_cityjson(path: str) -> dict | None:
         return json.load(handle)
 
 
+def _dedup_cityjson_ids(path: str) -> bool:
+    """Rewrite CityJSON so CityObjects keys are unique (cjio rejects duplicates)."""
+    if os.path.isdir(path):
+        candidate = os.path.join(path, f"{os.path.basename(path)}.json")
+        if os.path.isfile(candidate):
+            path = candidate
+        else:
+            matches = [p for p in os.listdir(path) if p.endswith(".json")]
+            if matches:
+                path = os.path.join(path, matches[0])
+            else:
+                return False
+    try:
+        raw = json.load(open(path, "r", encoding="utf-8"), object_pairs_hook=lambda pairs: [(k, v) for k, v in pairs])
+    except (OSError, json.JSONDecodeError):
+        return False
+
+    first_names: dict[str, str] = {}
+
+    def convert(node, in_cityobjects: bool = False):
+        # object represented as list of pairs from object_pairs_hook
+        if isinstance(node, list) and node and all(isinstance(p, tuple) and len(p) == 2 for p in node):
+            if in_cityobjects:
+                counts: dict[str, int] = {}
+                obj: dict[str, object] = {}
+                for key, val in node:
+                    new_val = convert(val, False)
+                    idx = counts.get(key, 0)
+                    new_key = key if idx == 0 else f"{key}_{idx}"
+                    counts[key] = idx + 1
+                    # avoid accidental collision if suffix already existed
+                    while new_key in obj:
+                        idx = counts[key]
+                        new_key = f"{key}_{idx}"
+                        counts[key] = idx + 1
+                    first_names.setdefault(key, new_key)
+                    obj[new_key] = new_val
+                return obj
+            obj: dict[str, object] = {}
+            for key, val in node:
+                obj[key] = convert(val, key == "CityObjects")
+            return obj
+        if isinstance(node, list):
+            return [convert(x, False) for x in node]
+        return node
+
+    data = convert(raw, False)
+    cityobjects = data.get("CityObjects", {})
+    if isinstance(cityobjects, dict):
+        for co in cityobjects.values():
+            if not isinstance(co, dict):
+                continue
+            for rel in ("children", "parents"):
+                if rel in co and isinstance(co[rel], list):
+                    co[rel] = [first_names.get(cid, cid) for cid in co[rel] if isinstance(cid, str)]
+
+    try:
+        with open(path, "w", encoding="utf-8") as handle_out:
+            json.dump(data, handle_out, ensure_ascii=True, indent=2)
+            handle_out.write("\n")
+        return True
+    except OSError:
+        return False
+
+
 def _flatten_faces(boundaries, values, surfaces, current_type: str | None, faces: List[Tuple[List[int], str]]) -> None:
     """Recursively flatten boundaries with semantics values into faces."""
     if isinstance(values, list) and isinstance(boundaries, list):
@@ -340,10 +405,13 @@ def _ensure_cityjson_for_tile(tile_id: str, bounds: Tuple[float, float, float, f
         ok = _run([CITYGML_TOOLS, "to-cityjson", gml_path, "-o", cityjson_path], f"CityGML->CityJSON ({tile_id})")
         if not ok:
             return None
-        if not os.path.isfile(cityjson_path):
-            resolved = resolve_cityjson(cityjson_path)
-            if resolved:
-                cityjson_path = resolved
+    if not os.path.isfile(cityjson_path):
+        resolved = resolve_cityjson(cityjson_path)
+        if resolved:
+            cityjson_path = resolved
+    if not _dedup_cityjson_ids(cityjson_path):
+        print(f"[buildings] could not sanitize CityJSON IDs for {tile_id}: {cityjson_path}")
+        return None
     if not os.path.exists(tri_path):
         ok = _run([CJIO_CMD, cityjson_path, "upgrade", "triangulate", "vertices_clean", "save", tri_path], f"triangulate ({tile_id})")
         if not ok:

geodata_pipeline/gdal_utils.py

@@ -2,6 +2,7 @@ from __future__ import annotations
 
 import glob
 import os
+import xml.etree.ElementTree as ET
 from typing import Iterable, Sequence
 
 from osgeo import gdal
@@ -29,10 +30,48 @@ def open_dataset(path: str, purpose: str):
     return ds
 
 
+def _vrt_has_missing_sources(vrt_path: str) -> bool:
+    try:
+        tree = ET.parse(vrt_path)
+    except (ET.ParseError, OSError):
+        return True
+
+    vrt_dir = os.path.dirname(os.path.abspath(vrt_path))
+    missing = []
+
+    for source in tree.iterfind(".//SourceFilename"):
+        raw = (source.text or "").strip()
+        if not raw:
+            continue
+
+        candidates = []
+        if os.path.isabs(raw):
+            candidates.append(raw)
+        else:
+            candidates.extend(
+                [
+                    os.path.abspath(raw),
+                    os.path.abspath(os.path.join(vrt_dir, raw)),
+                ]
+            )
+
+        if not any(os.path.exists(path) for path in candidates):
+            missing.append(raw)
+
+    return bool(missing)
+
+
 def build_vrt(vrt_path: str, sources: Sequence[str], force: bool = False) -> bool:
-    if os.path.exists(vrt_path):
-        if not force:
+    rebuild = force
+
+    if os.path.exists(vrt_path) and not rebuild:
+        if _vrt_has_missing_sources(vrt_path):
+            print(f"{vrt_path} references missing sources; rebuilding...")
+            rebuild = True
+        else:
             return False
+
+    if rebuild and os.path.exists(vrt_path):
         try:
             os.remove(vrt_path)
         except OSError as exc:

geodata_pipeline/trees.py

@@ -43,14 +43,10 @@ def _ensure_dgm_vrt(cfg: Config) -> str:
 
 def _warp_to_tile(src_path: str, bounds: Tuple[float, float, float, float], res: float) -> gdal.Dataset:
     xmin, ymin, xmax, ymax = bounds
-    width = int(math.ceil((xmax - xmin) / res))
-    height = int(math.ceil((ymax - ymin) / res))
     opts = gdal.WarpOptions(
         outputBounds=bounds,
         xRes=res,
         yRes=res,
-        width=width,
-        height=height,
         resampleAlg="bilinear",
         dstNodata=np.nan,
         format="MEM",

geodata_to_unity.py

@@ -25,8 +25,8 @@ def parse_args(argv: Iterable[str] | None = None) -> argparse.Namespace:
     parser.add_argument(
         "--export",
         choices=["heightmap", "textures", "buildings", "trees", "all"],
-        default="all",
-        help="Which assets to export.",
+        default=None,
+        help="Which assets to export (default: all; skipped on --setup unless explicitly set).",
     )
     parser.add_argument("--raw-dgm1-path", dest="raw_dgm1_path", help="Override raw DGM1 directory.")
     parser.add_argument("--raw-dop20-path", dest="raw_dop20_path", help="Override raw DOP20 JP2 directory.")
@@ -64,24 +64,27 @@ def load_config(args: argparse.Namespace) -> Config:
 def main(argv: Iterable[str] | None = None) -> int:
     args = parse_args(argv)
     cfg = load_config(args)
+    target_export = args.export or "all"
 
     if args.setup:
         ensure_directories(cfg)
         print(f"Directories ensured. Config at {args.config}.")
+        if args.build_from_archive:
+            materialize_archives(cfg)
         if args.export is None:
             return 0
 
-    if args.build_from_archive:
+    if args.build_from_archive and not args.setup:
         materialize_archives(cfg)
 
     exit_codes = []
-    if args.export in ("heightmap", "all"):
+    if target_export in ("heightmap", "all"):
         exit_codes.append(export_heightmaps(cfg, force_vrt=args.force_vrt))
-    if args.export in ("textures", "all"):
+    if target_export in ("textures", "all"):
         exit_codes.append(export_orthophotos(cfg, force_vrt=args.force_vrt))
-    if args.export in ("buildings", "all"):
+    if target_export in ("buildings", "all"):
         exit_codes.append(export_buildings(cfg))
-    if args.export in ("trees", "all"):
+    if target_export in ("trees", "all"):
         exit_codes.append(export_trees(cfg))
 
     return max(exit_codes) if exit_codes else 0

pyproject.toml

@@ -3,7 +3,7 @@ name = "geodata-toolkit"
 version = "0.1.0"
 description = "Heightmap and orthophoto exporters using GDAL for Unity terrains."
 readme = "README.md"
-requires-python = ">=3.9,<3.13"
+requires-python = ">=3.9,<3.11"
 dependencies = ["gdal>=3.4", "cjio[export,reproject]>=0.9"]
 
 [build-system]

scripts/verify_pipeline.py

@@ -8,10 +8,10 @@ from pathlib import Path
 from typing import Iterable, Sequence
 
 DEFAULT_RAW_DIR = Path("raw/citygml/lod2")
-DEFAULT_CITYJSON_DIR = Path("work/cityjson")
-DEFAULT_CITYJSON_TRI_DIR = Path("work/cityjson_tri")
-DEFAULT_CITYJSON_SPLIT_DIR = Path("work/cityjson_split")
-DEFAULT_GLB_DIR = Path("export_unity/buildings_glb")
+DEFAULT_CITYJSON_DIR = Path("work/cityjson_lod2")
+DEFAULT_CITYJSON_TRI_DIR = Path("work/cityjson_lod2/tri")
+DEFAULT_CITYJSON_SPLIT_DIR = Path("work/cityjson_lod2/split")
+DEFAULT_GLB_DIR = Path("export_unity/buildings_tiles")
 DEFAULT_GLB_SPLIT_DIR = Path("export_unity/buildings_glb_split")
 DEFAULT_TILE_INDEX = Path("export_unity/tile_index.csv")
 
@@ -53,7 +53,7 @@ def parse_args(argv: Iterable[str] | None = None) -> argparse.Namespace:
         "--split-dir",
         type=Path,
         default=DEFAULT_CITYJSON_SPLIT_DIR,
-        help="Directory containing split CityJSON files (roof/wall).",
+        help="Directory containing split CityJSON files (roof/wall). Optional; skipped unless --check-split.",
     )
     parser.add_argument(
         "--glb-dir",
@@ -65,7 +65,7 @@ def parse_args(argv: Iterable[str] | None = None) -> argparse.Namespace:
         "--glb-split-dir",
         type=Path,
         default=DEFAULT_GLB_SPLIT_DIR,
-        help="Directory containing split GLB exports.",
+        help="Directory containing split GLB exports. Optional; skipped unless --check-split.",
     )
     parser.add_argument(
         "--tile-index",
@@ -73,17 +73,34 @@ def parse_args(argv: Iterable[str] | None = None) -> argparse.Namespace:
         default=DEFAULT_TILE_INDEX,
         help="Path to the tile_index.csv placement manifest.",
     )
+    parser.add_argument(
+        "--check-split",
+        action="store_true",
+        help="Also verify split roof/wall CityJSON and GLB outputs (current pipeline does not emit them by default).",
+    )
     return parser.parse_args(argv)
 
 
-def discover_tiles(raw_dir: Path, provided: Sequence[str] | None) -> list[str]:
+def discover_tiles(raw_dir: Path, provided: Sequence[str] | None, tile_index: Path | None) -> list[str]:
     if provided:
         return sorted(set(provided))
 
-    if not raw_dir.exists():
-        return []
+    if tile_index and tile_index.exists():
+        try:
+            import csv
 
-    return sorted(path.stem for path in raw_dir.glob("LoD2_*.gml"))
+            with tile_index.open(newline="", encoding="utf-8") as handle:
+                reader = csv.DictReader(handle)
+                tiles = [row["tile_id"] for row in reader if "tile_id" in row and row.get("tile_id")]
+                if tiles:
+                    return sorted(set(tiles))
+        except Exception:
+            pass
+
+    if raw_dir.exists():
+        return sorted(path.stem for path in raw_dir.glob("LoD2_*.gml"))
+
+    return []
 
 
 def path_exists(path: Path) -> bool:
@@ -123,13 +140,14 @@ def verify_cityjson(tile_ids: Sequence[str], args: argparse.Namespace) -> list[s
     if missing_tri:
         issues.append(summarize_missing("clean + triangulated CityJSON exports", missing_tri))
 
-    missing_roof = collect_missing(tile_ids, args.split_dir, "{tile_id}.roof.city.json")
-    if missing_roof:
-        issues.append(summarize_missing("split roof CityJSON exports", missing_roof))
+    if args.check_split:
+        missing_roof = collect_missing(tile_ids, args.split_dir, "{tile_id}.roof.city.json")
+        if missing_roof:
+            issues.append(summarize_missing("split roof CityJSON exports", missing_roof))
 
-    missing_wall = collect_missing(tile_ids, args.split_dir, "{tile_id}.wall.city.json")
-    if missing_wall:
-        issues.append(summarize_missing("split wall CityJSON exports", missing_wall))
+        missing_wall = collect_missing(tile_ids, args.split_dir, "{tile_id}.wall.city.json")
+        if missing_wall:
+            issues.append(summarize_missing("split wall CityJSON exports", missing_wall))
 
     return issues
 
@@ -140,20 +158,21 @@ def verify_glb(tile_ids: Sequence[str], args: argparse.Namespace) -> list[str]:
     if missing_base:
         issues.append(summarize_missing("base GLB exports", missing_base))
 
-    missing_roof = collect_missing(tile_ids, args.glb_split_dir, "{tile_id}_roof.glb")
-    if missing_roof:
-        issues.append(summarize_missing("split roof GLB exports", missing_roof))
+    if args.check_split:
+        missing_roof = collect_missing(tile_ids, args.glb_split_dir, "{tile_id}_roof.glb")
+        if missing_roof:
+            issues.append(summarize_missing("split roof GLB exports", missing_roof))
 
-    missing_wall = collect_missing(tile_ids, args.glb_split_dir, "{tile_id}_wall.glb")
-    if missing_wall:
-        issues.append(summarize_missing("split wall GLB exports", missing_wall))
+        missing_wall = collect_missing(tile_ids, args.glb_split_dir, "{tile_id}_wall.glb")
+        if missing_wall:
+            issues.append(summarize_missing("split wall GLB exports", missing_wall))
 
     return issues
 
 
 def main(argv: Iterable[str] | None = None) -> int:
     args = parse_args(argv)
-    tile_ids = discover_tiles(args.raw_dir, args.tiles)
+    tile_ids = discover_tiles(args.raw_dir, args.tiles, args.tile_index)
     if not tile_ids:
         print("No tile IDs found. Add LoD2 GML files or pass --tiles.", file=sys.stderr)
         return 1

uv.lock

@@ -1,9 +1,8 @@
 version = 1
 revision = 3
-requires-python = ">=3.9, <3.13"
+requires-python = ">=3.9, <3.11"
 resolution-markers = [
-    "python_full_version >= '3.11'",
-    "python_full_version == '3.10.*'",
+    "python_full_version >= '3.10'",
     "python_full_version < '3.10'",
 ]
 
@@ -24,8 +23,7 @@ dependencies = [
     { name = "click", version = "8.1.8", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
     { name = "click", version = "8.3.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
     { name = "numpy", version = "2.0.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
-    { name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.10.*'" },
-    { name = "numpy", version = "2.3.5", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
+    { name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/69/33/125385a9e3438b3d31dcb2d788719ca4e929e98675c7a8c1e2e5507c898f/cjio-0.10.1.tar.gz", hash = "sha256:8788a1333bcac3dc74fc3fa4c9f220b3015a742eb4c27af55161ec077a75fc44", size = 48480, upload-time = "2025-05-09T17:31:20.614Z" }
 wheels = [
@@ -40,8 +38,7 @@ export = [
 ]
 reproject = [
     { name = "pyproj", version = "3.6.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
-    { name = "pyproj", version = "3.7.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.10.*'" },
-    { name = "pyproj", version = "3.7.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
+    { name = "pyproj", version = "3.7.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
 ]
 
 [[package]]
@@ -64,8 +61,7 @@ name = "click"
 version = "8.3.1"
 source = { registry = "https://pypi.org/simple" }
 resolution-markers = [
-    "python_full_version >= '3.11'",
-    "python_full_version == '3.10.*'",
+    "python_full_version >= '3.10'",
 ]
 dependencies = [
     { name = "colorama", marker = "python_full_version >= '3.10' and sys_platform == 'win32'" },
@@ -111,8 +107,7 @@ version = "2.0.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "numpy", version = "2.0.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
-    { name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.10.*'" },
-    { name = "numpy", version = "2.3.5", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
+    { name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/bc/7b/bbf6b00488662be5d2eb7a188222c264b6f713bac10dc4a77bf37a4cb4b6/mapbox_earcut-2.0.0.tar.gz", hash = "sha256:81eab6b86cf99551deb698b98e3f7502c57900e5c479df15e1bdaf1a57f0f9d6", size = 39934, upload-time = "2025-11-16T18:41:27.251Z" }
 wheels = [
@@ -124,15 +119,6 @@ wheels = [
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